Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922748.1_cds_XP_016471509.1_63843
CDS Infomation

[gene=LOC107793633] [db_xref=GeneID:107793633] [protein=pentatricopeptide repeat-containing protein At1g51965, mitochondrial-like] [protein_id=XP_016471509.1] [location=complement(join(36753..37958,39642..40433))] [gbkey=CDS]
Sequence

ATGAAACTCCGGCATCCCTGCTACCGGCTCCGGCATCCCTGCTACCGGCTCCGGCGGACA
TTCCGGCAGCAGTTCCGATGCTTCGGCACCAAATACAGCGGCAGAGTGGTAGTCGAAGCC
GAAGATGGCCGTTCCTTCGCCGTCGAAGTCGATGCTCCAACTCTCCAAGCAGACTCCAGA
GGCTATGCTCTCCCCCGCCGTGACCTAATCTGTAAAATCTCCCAAATTCTAAAATCACCT
CCGTCCCCTTCATCCGATCCATTCCTTGACCTATCCGACTACCTGGACACATTAACCTTA
ACTCTAACTCCCTCGGAAGCTTCCGAAATCCTCAAAAACCTCAAATCCCCAACCTTAGCT
CTTCGTTTCTTCCGATTTTGCCCCTCTGAAATCCCTAAATTTCGCCATGACTGTTTCACT
TACAACCGTATACTTCTCATCCTCTCCAAGTCTTCTCTACCGAACCGGCTCGATTGCGTA
CGCGAAATTATCGATGAAATGGAACGGTCTGGTATAAGTGGAAACATCTCCACCGTTAAT
CTTCTCATTGGAATATTCGGAGACGGCCAACAAGGGAATGGACTTAATGAGCTGACCAGG
TGTTTGGAGTTGGTTAAAAAATGGGATTTGAGGTTGAATTGTTACAGTTATAAGTGTATG
TTACAAGCTTATATTAGATTGAGCAATTCAGATAAGGCTTTAGAAGTTTACCAAGAAATG
AGGAGGCGTGGCTATAGATTGGATATATTTGCGTACAACATGCTTCTTGATGCTCTTGCT
AGGGACCAAAAGGTTGATCAGGCCTACAAGGTTTTTGAGGACATGAAGAAGTGGCACTGC
GAACCAGATGAATATACATATACCATTCTGATCAGAATGACTGGGAAATTAGGGAAGCCT
GGCGAATCACTGTCTTTCTTTCAGGAAATGCTGTCGAAGGGCATATCACCGAATTTAATG
GCTTATAATACTATGATCGAAGCTCTTGCCAAAGGCCGAATGGTTGATAAGACTATCTTT
GTCTTCTCTAAGATGGTGGGGAATAGTTGCCGTCCAAATGAATTTACCTACAGTATTATT
TTAAATGTATTGGCTGCAGAAGGGCAACTTGGAAGACTTGATGAAGTTGTGGAAATATCT
AAGAGATACATGAATAAACCAATATATGCATATCTTGTTAGAACATTGAGTAAACTAGGC
CATGCAAACGAAGCTCACAGGCTCTTTTGCAATATGTGGAGCTTCCATGATGGAGGAGAT
CGTGATGCTTTCTTATCCATGTTAGAGAGCTTATGCAACAGTAAGAAAGTAACTGAGGCT
ATTGACTTGCTGAATAAGATGAATGAAAAGGGAGTAAAAACAGATACCTTCATGTATAAT
ACTGTGTGCGCTGCTATTGGGAAATTAAAGCAGATTTCTCATCTTCATGATCTCTATGAG
AAGATGAAACTGGATGGCCCTTCACCAGACATATTTACTTATAACATTTTGATCTCTAGC
TTTGGTAGAGCAGGACAGGTTGAGGAAGCTCTCAAGATTTTTGAAGAACTTGAGAATAGC
AATTGTAAACCTGATATTGTCTCCTATAACTCCTTAATAAATTGTCTGGGGAAGAATGGT
GACATTGATGAAGCGCACGTGAAATTCATTGAGATGCAGGAAAAGGGCTTGAATCCTGAT
GTTGTAACATATAGTACTCTCATTGAATGCTTTGGGAAGACAGAAAAAGTTGAGATGGCA
TATCGCCTCTTTGATGAAATGCTTGCAGCTGGTTGTTATCCTAACATAGTGACATACAAT
ATCCTACTTGACTGTCTGGAGAGAAGTGGGAGAACTTCAGAAGCTGTTAGTTTATATGCA
AAATTGAAAGAACAGGGTTTGACAGCTGATTCAATCACATATACCATCCTTGAACGTTTA
CAAAGCGGTTCACATAGAACAACTAGAGTTCGCAGACAACATCCAATCACCGGTTGGGTG
GTTAGCCCATTAAGGTGA

Peptide Sequence

PEP ID

XP_016471509.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial-like [Nicotiana tabacum]
Sequence

MKLRHPCYRLRHPCYRLRRTFRQQFRCFGTKYSGRVVVEAEDGRSFAVEVDAPTLQADSR
GYALPRRDLICKISQILKSPPSPSSDPFLDLSDYLDTLTLTLTPSEASEILKNLKSPTLA
LRFFRFCPSEIPKFRHDCFTYNRILLILSKSSLPNRLDCVREIIDEMERSGISGNISTVN
LLIGIFGDGQQGNGLNELTRCLELVKKWDLRLNCYSYKCMLQAYIRLSNSDKALEVYQEM
RRRGYRLDIFAYNMLLDALARDQKVDQAYKVFEDMKKWHCEPDEYTYTILIRMTGKLGKP
GESLSFFQEMLSKGISPNLMAYNTMIEALAKGRMVDKTIFVFSKMVGNSCRPNEFTYSII
LNVLAAEGQLGRLDEVVEISKRYMNKPIYAYLVRTLSKLGHANEAHRLFCNMWSFHDGGD
RDAFLSMLESLCNSKKVTEAIDLLNKMNEKGVKTDTFMYNTVCAAIGKLKQISHLHDLYE
KMKLDGPSPDIFTYNILISSFGRAGQVEEALKIFEELENSNCKPDIVSYNSLINCLGKNG
DIDEAHVKFIEMQEKGLNPDVVTYSTLIECFGKTEKVEMAYRLFDEMLAAGCYPNIVTYN
ILLDCLERSGRTSEAVSLYAKLKEQGLTADSITYTILERLQSGSHRTTRVRRQHPITGWV
VSPLR

Transcript Sequence

Gene sequence data has not been registered.